MmuALTD1021978-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000034848 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:MGI Symbol;Acc:MGI:1920918]
Coordinates
chr2:66191559-66197863:-
Coord C1 exon
chr2:66197668-66197863
Coord A exon
NA
Coord C2 exon
chr2:66191559-66191783
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
AAAGTTTCGTTTTCCCACAGAAG
3' ss Score
7.83
Exon sequences
Seq C1 exon
CACTTCCCCTGAGAAGCAGGAGTCTGTGCAGTTAGCAGTGAGGACAGCAGAAAAGCTCCTTAAGGAACTGAAGCCTCAGACCGTCCAGGGCCGCCTGCAACTCCGCATAATGGAAAACTGCTGCTTGATGGCCACCAAGCAGAAGTCCAGTGTGGAGCAGGCACTGAACACCTTCACCGAAATCGCAGCCTCCGAG
Seq A exon
NA
Seq C2 exon
AAGGATCATATCCCAGCTCTCTTGGGAATGGCAACGGCTTATATGATCTTGAAACAGACTCCAAAAGCCAGAAACCAGCTGAAGCGGATTGCAAAAATGCCTTGGAATCCTATTGAAGCCGAGGATCTGGAGAAGAGCTGGCTGCTGCTTGCTGATATTTATATCCAGTCAGCAAAATATGACATGGCAGAGGAATTACTAAAGCGGTGTCTCTGCCATAACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034848-43-42,44-42-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134241=TPR_12=PU(97.4=98.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCAACTCCGCATAATGGA
R:
TAAGCCGTTGCCATTCCCAAG
Band lengths:
144-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types