MmuALTD1022972-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000036333 | Kidins220
Description
kinase D-interacting substrate 220 [Source:MGI Symbol;Acc:MGI:1924730]
Coordinates
chr12:25013297-25017052:+
Coord C1 exon
chr12:25013297-25013434
Coord A exon
chr12:25013435-25013441
Coord C2 exon
chr12:25016890-25017052
Length
7 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACT
5' ss Score
6.6
3' ss Seq
TGTTTATGTGTTCATTAAAGGGC
3' ss Score
6.72
Exon sequences
Seq C1 exon
GATACTTACCGCAGAAGGCAGATGCAGAGAACCATCACGAGGCAGATGTCCTTTGATCTCACAAAGCTGCTGGTTACTGAGGATTGGTTCAGTGACATCAGTCCACAAACCATGAGACGGTTACTCAATATTGTTTCG
Seq A exon
GTGACAG
Seq C2 exon
GGCGGCTACTAAGAGCCAATCAGATTACTTTCAACTGGGACAGGCTAGCCAGCTGGATCAACCTTACTGAGCAGTGGCCATACCGGACGTCCTGGCTCATACTATATCTGGGAGAGACTGAAGGTATTCCTGACCAGATGACGCTAAAGACCATCTATGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036333-42-37,43-37-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076939=KAP_NTPase=FE(9.3=100)
A:
NA
C2:
PF076939=KAP_NTPase=PD(0.6=5.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCTCACAAAGCTGCTGGT
R:
GATTGGCTCTTAGTAGCCGCC
Band lengths:
106-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types