MmuALTD1023254-4/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000036721 | Zscan12
Description
zinc finger and SCAN domain containing 12 [Source:MGI Symbol;Acc:MGI:1099444]
Coordinates
chr13:21362772-21364051:+
Coord C1 exon
chr13:21362772-21362872
Coord A exon
chr13:21362873-21363175
Coord C2 exon
chr13:21363580-21364051
Length
303 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGC
5' ss Score
10.12
3' ss Seq
AACGATGACTTATCCCTTAGGTC
3' ss Score
7.98
Exon sequences
Seq C1 exon
GGGAGCAACAGGGCTCCACCGCTTCCGGCCTTTGTGGGAGTCCGCGATGACTTCCGGTTCCTGGGAGGGCTGGATTCCCTTCCCTGCGCAGGAGCGACGCG
Seq A exon
GTGAGCGAGCTCGTGCTCCAGGCGGGGGGAGGGTGCTCCCTGCTACCTAGACTCTCGGCCTTAGAAAGATGCTTGGAACCGGGGGAAAGGCCACCCGGGCTGCGCTGCGGCTGCCTATGGGTCCCCCTGGGGCGCGGAGCTGGCCCGGACCTAGGCACGCTGCAGAACTTTAAGTTAGAGTCACAGAACTGGAGGGGCAGGAGAAAAGCAGAGCACCCTCCCCAACTTCTAACCTTTATGAGTGGTTAAGTTCCAACTAAAGCCAGTTGGGAGACTGTACTATGTATATGTGATTTGTGCCAG
Seq C2 exon
GTCCACTGGGTAAGAAGATTTACCAAGGAGTTATTACTTGAAAGATTGATACATCTTTTATCTAGCTACGATGACATCTACTAGTGATACCAAGGTCTGTAAGAACCAGGGTGGACTTTTGGAAATAAAAATGGAGGAAGAATGTAAGTATACCACCAGACAAGATAGGAACCTACAAAAGAACACTTATAACAGAGACGTCTTCCGAAAATACTTCAGACAGTTTTGCTACCAGGAAACTTCTGGACCCCGGGAGGCTCTGAGCCGGCTGCGCGAGCTCTGCAGACAGTGGCTGCGGCCGGACTTGAACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCAGGGGAGCTGCAGGCCTGGGTGCAGGAGCAGAATCCGGAGAGTGTGGAGGAGGTGGTGACTGTGCTGGAGGATTTAGAGAGAGAGCTTGATGAACTAGGATACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036721-1-2,2-2,3-2,4-2-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.030
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=70.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGACTTCCGGTTCCTGGGA
R:
CAGCCACTGTCTGCAGAGC
Band lengths:
351-654
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types