MmuALTD1025170-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000039021 | Ttc16
Description
tetratricopeptide repeat domain 16 [Source:MGI Symbol;Acc:MGI:2443048]
Coordinates
chr2:32767937-32768969:-
Coord C1 exon
chr2:32768842-32768969
Coord A exon
NA
Coord C2 exon
chr2:32767937-32768102
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
3' ss Seq
GCCTTGGGCATTTCCCTCAGGCA
3' ss Score
7.48
Exon sequences
Seq C1 exon
CTGGGCAACCTGGCCTTCGCGGAGGCTGACTACAAGCAAGCGCTGGCCCTGAGCCCGCTGGATGAAGGAGCCAACTTGCGCATGGGTGTGCTGCAGGAGAAGCTGGGCTTCTGCCAGCAGAAACACAG
Seq A exon
NA
Seq C2 exon
GCAGTTCCAGACAGCAGAGGAGCACTTCTCGGAGGCCATAAGGCACAGCCCTCAGAAACCACAGTACTACCTGCACCGGGCCAAGTGCCGACAGTTCCTGCAGAACACTCTGGGGGCCCGCCTGGATGTCGCTACTGTACTGCTTCTCAATCCCGAGTATCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039021-16-18,17-18-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.089
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(33.8=47.9),PF134141=TPR_11=PU(20.0=27.1)
A:
NA
C2:
PF134141=TPR_11=PD(78.5=91.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGAAGGAGCCAACTTGC
R:
AGAAGTGCTCCTCTGCTGTCT
Band lengths:
99-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types