MmuALTD1025659-2/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000039632 | Ccdc151
Description
coiled-coil domain containing 151 [Source:MGI Symbol;Acc:MGI:1924859]
Coordinates
chr9:21990397-21990957:-
Coord C1 exon
chr9:21990892-21990957
Coord A exon
chr9:21990802-21990891
Coord C2 exon
chr9:21990397-21990481
Length
90 bp
Sequences
Splice sites
5' ss Seq
GAGGTTCAC
5' ss Score
-1.16
3' ss Seq
CCTACCCCCCCCCCCCGCAGTTC
3' ss Score
10.35
Exon sequences
Seq C1 exon
GATGATACGGTATTGGCAGGAAAGAAGTTAGACCGGGACTCAGAGGACTACGCTTACAATCTGCTG
Seq A exon
GTAGTTGTCCAGGAAAAGCTGCTGAAACTGCAGGACCAACTGGAGAGCCAGGACGTGCCTGAGTTGCTGCGACACATAGCAGACCGAGAG
Seq C2 exon
TTCCTGGCCACGCTAGAAGGAAAGCTGCCCCTATACAACACCCGCATCCTTCTGCCCGTCGCCAGTGTCAAGGACAAGTTCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039632-17-15,18-15,19-15,20-15-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGATACGGTATTGGCAGGA
R:
CAAAGAACTTGTCCTTGACACTGG
Band lengths:
151-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types