MmuALTD1027278-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000041797 | Abca9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:MGI Symbol;Acc:MGI:2386796]
Coordinates
chr11:110154378-110155296:-
Coord C1 exon
chr11:110155155-110155296
Coord A exon
NA
Coord C2 exon
chr11:110154378-110154563
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
AATTTTTTTTCTCCTTCCAGATA
3' ss Score
11.21
Exon sequences
Seq C1 exon
GCTTTCCTGGAGTCTGATGTATGCTGGCTTTATCCTTGTCGTGGCTGTTTTGATGTCTCTTATTGTGAAATCTGCCCAAGTTGTCGTCTTAACTGGTTTCATGGTGGTGTTCCTTCTGTTTCTCTTTTATGGCCTGTCTTTG
Seq A exon
NA
Seq C2 exon
ATAACTTTATCTTTCCTCATGAGTGTGTTGATAAAGAAACCGTTTCTTACTGGCTTGGCTATCTTCATCCTTACCGTCTTCTGGGGAAGTCTGGGATTCACAGCGTTATACAAACATCTTCCTGCCTTTGTGGAATGGACCTTGTGTTTTCTTAGCCCCTTTGCCTTTACCACTGGAATGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041797-9-7,10-7-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.0=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(15.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTCCTGGAGTCTGATGTATGC
R:
GGGCCATTCCAGTGGTAAAGG
Band lengths:
326-763
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types