MmuALTD1028735-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000045631 | Tmprss12
Description
transmembrane (C-terminal) protease, serine 12 [Source:MGI Symbol;Acc:MGI:1922252]
Coordinates
chr15:100285126-100289413:+
Coord C1 exon
chr15:100285126-100285287
Coord A exon
NA
Coord C2 exon
chr15:100289271-100289413
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTATAA
5' ss Score
5.96
3' ss Seq
TGTCGTTCTGCTGCTGACAGGCA
3' ss Score
7.13
Exon sequences
Seq C1 exon
AGATCCTCTGAAGTGGAGAGCAGTGATGGGGACCAATGACCTCACCCGGAGCCCCTACCACAGCAGGAATATACGAATCACAGACATCATCATACCACCAGATTTCATTATGGAAACTTTCGTAAATGATATCGCACTGTTCCGTTTAAAGAGAGCTGTGAG
Seq A exon
NA
Seq C2 exon
GCAATGGCACAACCATTTTACAAGAGGCGAAAGTACACTTCATCTCTCGGGAGGTTTGCAGCTCTGACCAGGGCTACAGTGGAATGATTCCCAACACTTCATTCTGTGCAGGTCACGAAAATGGGACCTTTGACTCATGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045631-4-3,5-3-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.1=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCTACCACAGCAGGAATA
R:
CCTGCATGAGTCAAAGGTCCC
Band lengths:
255-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types