MmuALTD1028959-5/5 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000046434 | Hnrnpa1
Description
heterogeneous nuclear ribonucleoprotein A1 [Source:MGI Symbol;Acc:MGI:104820]
Coordinates
chr15:103242644-103244028:+
Coord C1 exon
chr15:103242644-103242670
Coord A exon
chr15:103242671-103242718
Coord C2 exon
chr15:103243959-103244028
Length
48 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
ACATTGTCTTAATTCTACAGGTG
3' ss Score
10.62
Exon sequences
Seq C1 exon
GTGGCTTTGGTGGCAGCCGTGGTGGTG
Seq A exon
GTGGATATGGTGGCAGTGGGGATGGCTATAATGGATTTGGCAATGATG
Seq C2 exon
GTGGCTATGGCGGTTCCAGCAGCAGCAGTAGCTATGGCAGTGGCAGGAGGTTCTAATTACATACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046434-28-31,29-31,30-31,31-31,32-31-5/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.712 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGGTGGCAGCCGTGG
R:
TGGCTGTATGTAATTAGAACCTCCTG
Band lengths:
92-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types