MmuALTD1028975-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000046585 | Cfap58
Description
cilia and flagella associated protein 58 [Source:MGI Symbol;Acc:MGI:2685815]
Coordinates
chr19:47988465-48026839:+
Coord C1 exon
chr19:47988465-47988569
Coord A exon
chr19:47988570-47988792
Coord C2 exon
chr19:48026720-48026839
Length
223 bp
Sequences
Splice sites
5' ss Seq
CGGGTAACG
5' ss Score
6.95
3' ss Seq
CTGGTTATGCCTTCCCCCAGGAG
3' ss Score
8.81
Exon sequences
Seq C1 exon
GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG
Seq A exon
GTAACAGTCTCTGGGCCTGGGCTCCCCGGGCAAGCATGGCGGTCTCCAGGAGCCTTAGAATTGGTGACTTGTAGTGTTGCAAGCCCCGTCTTAAACTGTAGATGGCAACAGCGACTCACACACGGAGAACAAACAGCCTAACGAATTGTTCTTTTACTCTGCGATCACCGATATTTCAAGAATCCCAGGAAATTAAGTTCAAGGCTAGACTTACCGCAGTCGG
Seq C2 exon
GAGAAAGAGAAGCTGTATGTGGAGCTGAAGCACATCTTGGCCCGGCAGCCTGGCCCAGAGGCTGCGGAGCAGCTGCAGATCTACCGGCATACACTGCGCGAGAAGACTAAGCAGCTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046585-18-17,19-17-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCGACCCTAGCACCTTC
R:
CAGCTGCTTAGTCTTCTCGCG
Band lengths:
221-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types