MmuALTD1029034-1/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000046792 | Zfp787
Description
zinc finger protein 787 [Source:MGI Symbol;Acc:MGI:1914359]
Coordinates
chr7:6143062-6155434:-
Coord C1 exon
chr7:6155206-6155434
Coord A exon
NA
Coord C2 exon
chr7:6143062-6143150
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
GTGTTGTACCTTTTCAACAGGGA
3' ss Score
9.65
Exon sequences
Seq C1 exon
CTGACCGGAAACGGCGGCCCATGGTCAGTCTCGGCCCAAGTTCTCCCAAGTCCTCTCCTTCCTCAAATCGAGTCGCCTGGCCCGTTGCTGCCTCGGGGGCCATGCGCTGGCCTTTGATCCAGCGAGTAATTACGGGATGCAGGTGGCGGGAGGCTCATTCATCTATTTCCCCCGCGCGTGCTGACCGGCGGCAGGAAACACGTCCTGGGAGGGGAAGCGCCAGGCCAAG
Seq A exon
NA
Seq C2 exon
GGACCCAGATATGGAGCTTCGAGAAGAAGCTTGGTCTCCGGGGCCACTGGATTCTGAGGACCAGCAGATGGCCAGTCATGAGAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046792-1-4,2-4,3-4-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCTCAAATCGAGTCGCC
R:
CTCATGACTGGCCATCTGCTG
Band lengths:
255-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types