MmuALTD1029440-1/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000048038 | Ccdc187
Description
coiled-coil domain containing 187 [Source:MGI Symbol;Acc:MGI:3045295]
Coordinates
chr2:26253340-26254885:-
Coord C1 exon
chr2:26254841-26254885
Coord A exon
NA
Coord C2 exon
chr2:26253340-26253482
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
3' ss Seq
TACCGTGTCTTGCCCTGCAGCCT
3' ss Score
9.4
Exon sequences
Seq C1 exon
AGTTGCAGCTCCAGAGTCAAGACCACCTGGAAGGAGGTCTCCAAG
Seq A exon
NA
Seq C2 exon
CCTTTCCTCTGGGCAGAAGGAAGTGACATCTCCCCAGACAACTTCAGTCGCAGATGAGTCCCTGCAGCTTCTCAGACTGAACCAAGCAGATGTCATACCTGGGACCAGAAATCCATCCATGGAGAGTGAACATGATAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048038-31-30,32-30,33-30-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.773 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGTCAAGACCACCTGGA
R:
GGCTATCATGTTCACTCTCCATGG
Band lengths:
175-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types