MmuALTD1029715-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000049134 | Nrap
Description
nebulin-related anchoring protein [Source:MGI Symbol;Acc:MGI:1098765]
Coordinates
chr19:56361654-56364027:-
Coord C1 exon
chr19:56363926-56364027
Coord A exon
chr19:56363711-56363925
Coord C2 exon
chr19:56361654-56361851
Length
215 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
CCTGTTTTGTTGCATTCAAGGTT
3' ss Score
8.47
Exon sequences
Seq C1 exon
GTTAAATACAAAGAAGAATATGAGAAAATGAAGGGCAGAGCCCTGGGAGCCACAGACTCTAAGCTTCTGCATTCTCTGCAGGTGGCCAAGATGAGCAGCGAG
Seq A exon
GTAAACTTCCTCCCGCCCCAGCCCCTAACTGATAGCTGTGCTTAAAAGTTCCTCCTGGGCAAGCTTGCCTTTCTGCAGACTTCCACCTGCAAGGCTTTTCTCTCTTGGCTTATATACGAGGAACTCGTTCGTTTTCTTTATTTTGTCAAAGCACAGTGTTCTTTAAAAGTACGTGAGGTGGATGGTCCCGGGGATGACAGCGTCTACTGAGCAAG
Seq C2 exon
GTTGAATATAAGAAAGGGTTTGAGGAGAGTAAAACCCACTTTAACCTGCCCATGGACATGGTGAACCTCAGGCACGCTAAGAAGGCCCAAGCTCTTGCCAGTGACCTTGACTACAGAAAGAAACTGCATGACTACACGGTGCTGCCTGAAGATATGAAAACTCAGTGGGCCAAGAAAGCCTACGGGCTGCAGAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049134-19-21,20-21-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=NA C2=0.006
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=32.4),PF0088013=Nebulin=PU(53.6=44.1)
A:
NA
C2:
PF0088013=Nebulin=PD(39.3=16.7),PF0088013=Nebulin=WD(100=39.4),PF0088013=Nebulin=PU(55.2=24.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATATGAGAAAATGAAGGGCAGAGC
R:
CTCGCTCTGCAGCCCGTAG
Band lengths:
284-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types