MmuALTD1030073-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000050600 | Zfp831
Description
zinc finger protein 831 [Source:MGI Symbol;Acc:MGI:3641861]
Coordinates
chr2:174657673-174704180:+
Coord C1 exon
chr2:174657673-174657809
Coord A exon
chr2:174657810-174657842
Coord C2 exon
chr2:174704023-174704180
Length
33 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
3' ss Seq
AAACACAGTCTCTCTTTCAGGTC
3' ss Score
7.46
Exon sequences
Seq C1 exon
GTGTGAAGGGAGTTTCTGGCAGAGAGCCAAACGCCTGTGCAAGCCACCCTGGTTGCCAAGAAGAAGCTGTCTCCCCCACCGACTTGAGGGGTTAGAGCCACGGGGGACCCTTGGGAGGAGTTCGGCAGAAGTGGCAG
Seq A exon
GTAACATTTTCCTCGGTGGTGAATCCGGACTAG
Seq C2 exon
GTCGAAATGTACAAGGGGAGCCATCTTGTGCCAGCAAAGACTTGTCTGTGTCTCATGGGAACAAAGAAAAGGAAGGTGACTGTAGTCAGACTTCGAGACCCATGTCTCCGGGCATGAGCTCAAAAACCATGTTGGAAATGGACAAATCAGCTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050600-7-11,8-11-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.479 A=NA C2=0.925
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGAAGCTGTCTCCCCCA
R:
AGACAAGTCTTTGCTGGCACA
Band lengths:
127-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types