MmuALTD1030707-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000052955 | Cpvl
Description
carboxypeptidase, vitellogenic-like [Source:MGI Symbol;Acc:MGI:1918537]
Coordinates
chr6:53974622-54024398:-
Coord C1 exon
chr6:53978635-54024398
Coord A exon
chr6:53978342-53978634
Coord C2 exon
chr6:53974622-53974807
Length
293 bp
Sequences
Splice sites
5' ss Seq
GGGGTGTGT
5' ss Score
3.14
3' ss Seq
TGTTACTGCTCTTGCCCCAGGCC
3' ss Score
8.73
Exon sequences
Seq C1 exon
GAAGGATATCTGAATGACTGGAGCAGTGGGAATCAGATGAGAACAGGAACCATAAATATATCCCGGCTTCGAGTCTCGGCCCCACTATTCAATGATGGAGTCCTCCTGATCAAGTTGGTTCAGTCGTGTTTTTGTTTGTTTGTTTGCTTTGTTTTTAACACTCTCAGACATCTAAATTAGATCATATGAACACTTAATGTCTTCTGTAGTTCTACCTTGGCTCCTTCTCATTTATATCCATCAATGGCACACACGTTTGCTTAGTAATGCTTACATGTGTATTTGTCATAGATGCTAAGCAGAACCAGATACAAATACTATAAGGATAACTGGACTCACCATCCTCACTTTTATCCCAAGCCTTCTAAGTTACCAAGGAAAACCCCACGTTGAGCCTCTGAAGTTCTGTGGCTGTAGGTCGGGATACATCCCAATAGAATTTTCGAGAAAAAAGAACAAACAGAACCTTATTCCTAGGAAACGCCAGAGGTCATAACCAG
Seq A exon
GTAGCTATGAGGAATAAGGAACAAGCCCCCTGCTTTTTGTTGTGGCTATCAGTTGCTTTGTTTTGTTTGAAGGAAAATCAAAATATCAGAAAAACTACTCTTTTGTATTTACAAGATTAATTGTTGTTGGAAACTTAGAATTTTATATGAAGTATAAAGCAAGGAGGAAATAACTATATCCGCTCCAGGGGTTTACTCTTGTTTACCCAAAGCTTTGTCATCTTTTCCACGTGCTTCCCTCAATCACTTTATTGAGTGGTAACTTATTAATCTGGCGTGCTGCTGCAGATGGG
Seq C2 exon
GCCAACAAGAAATGGTTCGTGCCAAGTGGAAGATGGTTGTTTCACTGATCTTGTTTATGGTCAGCCCTGGTGATGGACTGTTTCATGCAGTATACCGAAGTATCCTTGTTTCCCAGTCCTTCAAGGGGGATGCAGGACAGCCTCTTTTTCTTAGCCCATACATCAAAAACGGGAAGATCAAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052955-3-3,4-3,5-3-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCACACACGTTTGCTTAGT
R:
CCATCTTCCACTTGGCACGAA
Band lengths:
292-585
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types