MmuALTD1030714-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000052974 | Cyp2f2
Description
cytochrome P450, family 2, subfamily f, polypeptide 2 [Source:MGI Symbol;Acc:MGI:88608]
Coordinates
chr7:27130373-27131357:+
Coord C1 exon
chr7:27130373-27130435
Coord A exon
NA
Coord C2 exon
chr7:27131170-27131357
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAC
5' ss Score
7.56
3' ss Seq
CCTTCTCCTTCTACCTCCAGCCC
3' ss Score
10.29
Exon sequences
Seq C1 exon
AAACCGTGGGCACCACACTGCGTCACGCCTTCCTTATTCTTATGAAATACCCCAAAGTGCAAG
Seq A exon
NA
Seq C2 exon
CCCGCGTGCAGGAAGAGATTGACCGTGTGGTGGGGCGCTCGCGGATGCCGACGCTGGAAGACCGTACATCCATGCCTTACACAGATGCAGTGATCCACGAAGTGCAACGCTTTGCTGACGTCATCCCCATGAACCTGCCTCACCGTGTCACTCGGGACACACCTTTCCGGGGCTTCCTGATACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052974-25-19,26-19-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.194
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(29.6=91.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACCACACTGCGTCAC
R:
GTATCAGGAAGCCCCGGAAAG
Band lengths:
238-646
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types