MmuALTD1031046-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000054128 | H2-T3
Description
histocompatibility 2, T region locus 3 [Source:MGI Symbol;Acc:MGI:95959]
Coordinates
chr17:36185686-36186710:-
Coord C1 exon
chr17:36186543-36186710
Coord A exon
NA
Coord C2 exon
chr17:36185686-36186352
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGG
5' ss Score
3.33
3' ss Seq
TGTTCTTCATCTTGGGACAGCTG
3' ss Score
6.42
Exon sequences
Seq C1 exon
GTGGAAACGGAGACGATAACACTGCTGCATATCAGAATGAGAGGGAACACTTGTCCCTGAGCCCTCGGGCTGAATCTGAGGCACTCGGGGTGGAAGCTGGGATGAAGGATCTTCCTTCTGCCCCACCATTGGTCTCCTGACAATGTCTTGTTACTTCTTCTACTGCAG
Seq A exon
NA
Seq C2 exon
CTGCCACATGGGACTGAGTCACTAGTTCTGACTTCTGAACAGTGGAATCACTTTGGGCAGCCGTGCCTGCCGTTTTATGCTTTTGACTATGCATACAATGGGAAAATCTGGAGAGCACAGCCTGCCCCTGCACACCAAGACTCAGACCCTACATTAGCTGTCATCCCTTGCACAGCCAACCTTCCTGGTCCTCAGGCATTGGGGGACATCTTCATCCTGTCAGCTCCACGCTGTCCTGGGCGTGTGTCTCCTCACACGGCACAGTGTGTCTACTCATTTCCACACTGAACATGAGAATCAGAATGTGGATGTCAGGCAGTGGTGGGCAGGCCATTAATCCTAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGGCAGCCTGGTTTACAGAGTGAGTTCCAGGACAGACAGGGCTACACGGAGAAACTCTATCTTGGGGGGAAAAAAAAGACAGAAAGAAAAAAAAAAGAATCTGAATGTGGAGGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054128-10-14,11-14-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.891 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTCCTTCTGCCCCACCAT
R:
AAAGCATAAAACGGCAGGCAC
Band lengths:
143-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types