MmuALTD1031194-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000054715 | Zscan22
Description
zinc finger and SCAN domain containing 22 [Source:MGI Symbol;Acc:MGI:2443312]
Coordinates
chr7:12903630-12908239:+
Coord C1 exon
chr7:12903630-12903977
Coord A exon
chr7:12903978-12904085
Coord C2 exon
chr7:12906234-12908239
Length
108 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
GCTTTTTGATTTAATTCCAGGAT
3' ss Score
7.16
Exon sequences
Seq C1 exon
CCCCAATTCTGAGGCTTGAGTCGTCCCTGTGACTCACTGAATTCTTCTGCCCAATGGCCATCCCCAAGAGCCCTCTGAGCCCAGTACTCTGGGAACAGGATAGCTTCCTTCAGGTGAAGGTGAAAGAGGAGGAAGAAGCTAGCGACTCCCCGAGCCAGGAATCCAGCCCTAGCTTTACTGCCCACCCTGAGGCTGCACGATTGCGCTTCAGGCACTTCCGCTATGAGGAGGCATCCAGCCCTCATCAGGCGCTAGCCCAACTGCGAGAGCTATGTTGCCAGTGGCTGAGGCCAGAGTCGTCCTCCAAAGAACAGATGCTGGAGTTGCTGGTGCTGGAGCAGTTCCTGG
Seq A exon
GTGCGCTGCCCCCTGAGATCCAGGCCTGGGTGGGTGCTCAGTGCCCAAAGAGTGGAAAGGAGGCTGCCGTTCTGGTGGAGGATATGACTCAACTGCTGGACAGGAGAG
Seq C2 exon
GATGGGAGCCAGGAGTGGAACGTGAAGAGGCAAGTTGCAAACAGAGCAATACAGATGAATTGGAGCCACCAAAAATGGCGACTGAAACTGTCATGGGAAGCGTTTTGCCAAAATCTACCCTTGCCCACACTTGTAAACCTGAGAGCCACTCAGAGAGCCAGCCAGAATTCCTAGGAGCACTCTGGATGAAGTCTACTGCCCAAGAGATGGATTTCAGAAAAGCTCTGGGGCCTCACATGGATGCCCCCAAAGACCAGCCTGGCCATGAGTCTAACACCTCAGGAAACGGTTCCAACATGTGGCCCAACTTCCCTTCCCAAGACAAGGCTTCTTCAGAGGAGAAATTTGGCCCATTACTTGATAATGAGACAGTGCCTCCAGATACTTGCTCAGAGAAGAAATCCTCCAAGGATAGTGAATGTTTGAAAACATTCCAGAACACTTCAGCTCTGGAGGCCCACCAGAAGAGCCACTCTCAGAAGACGCCCTATGCCTGTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054715-6-4,7-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=NA C2=0.436
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(96.8=68.1)
A:
NA
C2:
PF0202312=SCAN=PD(2.1=0.6),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=7.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAGCTATGTTGCCAGTGG
R:
AGGAATTCTGGCTGGCTCTCT
Band lengths:
257-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types