MmuALTD1031411-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000055480 | Zfp458
Description
zinc finger protein 458 [Source:MGI Symbol;Acc:MGI:3040691]
Coordinates
chr13:67260117-67268894:-
Coord C1 exon
chr13:67268501-67268894
Coord A exon
chr13:67268397-67268500
Coord C2 exon
chr13:67260117-67260243
Length
104 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
3' ss Seq
ATTATTTTTTTCTTCTTCAGGAC
3' ss Score
11.35
Exon sequences
Seq C1 exon
GATGGGCCACTGCCCCCGGGAACAAGATTGAAGAGGAGAAGGTTGGAAAACAACAGGATGGCCAGGGCAATCTGGTTCTGCTGACTGCCTGTGCCTGAGATGCTGAAGGGAGCGCACTCAACTTTGCTGAAGAACATGCTCTGCCTAGCTGACCCGTGATCACATGGCTATAGTCAGATTCTCGGGATTTACAGAACTTCCTAAATTTCCTAGTGTGCTGGAACAGAAAGTCTTGTGAGGGCAACTGTTGTGTGGAATGTTAGTTCCTATTCCCTTGGAATGAATTGTTAGATTTATGGACGCCTCCGTTTGAATAGGAATTTCTAATAGACACCGCTGTGACCTGAATCATCACAATACATGGCTGTATAGCCACAGAATAATCTTGGAATTG
Seq A exon
GTATGAACCCGTGTTTGCACAATCCAAATAATTAACCTTTCTTTCCCCTTACCTCTGGTACGTGGGCTAGAGGGAAAGTTGAAGCGTTCAAGAACTCTAATTAA
Seq C2 exon
GACATGTTGTCATTCTGGGATGTGGCTATATATTTCTCTGCAGAGGAGTGGGAATGTCTGGGTCCTGCTCAGTGGAAACTGTACAGGGACGTGATGCTGGAGAATTACAGCAACCTTGTGTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055480-1-3,2-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.519 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGCAACTGTTGTGTGGAA
R:
AGCATCACGTCCCTGTACAGT
Band lengths:
256-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types