MmuALTD1031531-4/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000055817 | Mta3
Description
metastasis associated 3 [Source:MGI Symbol;Acc:MGI:2151172]
Coordinates
chr17:83795422-83800136:+
Coord C1 exon
chr17:83795422-83795443
Coord A exon
chr17:83795444-83795686
Coord C2 exon
chr17:83800050-83800136
Length
243 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
3' ss Seq
ATTTTTCTTTCTCTCATCAGATG
3' ss Score
10.83
Exon sequences
Seq C1 exon
AACACAAGGGTTACTGATAATG
Seq A exon
GTATAGGGCTGTTGTACTACTGTAAGGTAGACACTTGTAATTCTAAAGAACTGAAGAATAGAGCTGTCGTAGATACATTTGGAATAACAAGTAGCATTAGGGAAGGAAGGTGGTTCCCTCAGTACAGCGCCAGAGCCAGTGTTGTAGGGATTACAGGGTATTCGGGTGGGCGCAGAAGAGGGAAGCCACCGAGGTCGCAGCCCCAGGGAGGCATGAGCAGCACCTAAGAACTTGACTCAGTAG
Seq C2 exon
ATGCAGACAGACATGCCGAACTTTCTGGAAGCCCACTGAAAAGCAGAAGCACCAGGAAACCTTTGTCGTGTATCATTGGGTATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055817-49-39,50-39,51-39,52-39-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=0.698
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types