MmuALTD1032831-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000060407 | Cyp2a12
Description
cytochrome P450, family 2, subfamily a, polypeptide 12 [Source:MGI Symbol;Acc:MGI:105055]
Coordinates
chr7:27035311-27037375:+
Coord C1 exon
chr7:27035311-27035452
Coord A exon
NA
Coord C2 exon
chr7:27036465-27037375
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
CTTCCCTCTCTCCTCTTCAGGGA
3' ss Score
12.6
Exon sequences
Seq C1 exon
GGCACTGAAGTGTTTCCTATACTGGGTTCTCTGATGACAGACCCAAAGTTCTTCTCTAGCCCCAAAGACTTCAACCCACAGCACTTCCTGGATGACAAGGGACAGTTGAAGAAGATCCCTGCTTTTCTGCCCTTTTCCACTG
Seq A exon
NA
Seq C2 exon
GGAAGCGATTCTGCTTGGGAGACAGCCTGGCTAAGATGGAGCTGTTCCTGTTCTTCACCACCATCTTGCAGAACTTCCGTTTCAAGTTCCCAAGGAAACTAGAAGATATCAATGAGTCCCCTACACCAGAGGGGTTTACCAGGATCATACCAAAGTACACCATGAGCTTCGTGCCCATCTGATTCTGGGTTGAGCCAAGATGGGTCAAGAGGGAGGGAGAGCCTGAAGTGGTGCTAGAAGGAAGGTGGAGTGAAGAGAGAAGATAAAGACCTGGGGATTAAGAAGGGACCACGTGCATGGAAGAAATAGAAAACACTACTCACCTTGATAAAATTGTAACAGTAATAATAAAAAGAAAGAAACACACAGTGAGCAGCAGTAACAACAGCTGTCACTCATCCAGCAAGGGTCACTTGCCTCTGCAAAACTGTCCCATCCTTCTCTCATTCAGTACTTGAAACAAGAGCAGTGTGTTCCCAAGCCCAGTGTACAGGTCGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060407-10-8,11-8-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.3=91.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTTCCTGGATGACAAGGG
R:
AATCAGATGGGCACGAAGCTC
Band lengths:
246-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types