MmuALTD1032884-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000060630 | Zfp735
Description
zinc finger protein 735 [Source:MGI Symbol;Acc:MGI:1923640]
Coordinates
chr11:73693923-73713798:+
Coord C1 exon
chr11:73693923-73693999
Coord A exon
NA
Coord C2 exon
chr11:73710470-73713798
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
ATTTGCTTTATTACTTTCAGCAT
3' ss Score
7.88
Exon sequences
Seq C1 exon
AAGTCATTAAGACTTAGCTGTAGTCCCGGGCACCATCTTGGGACTGCTGCCACACCCGCTCCTCACAGAGAAGGAAG
Seq A exon
NA
Seq C2 exon
CATTGGATTGCAATCGTACCAAGAAGCTATTACCAAAGGTGTGTACACAAAATTATTTTCAGAAAGAAATAACACCAAGATTTGGACTTAATGGTCTTTTTGACCTATATAGAAAGAAGTTCTGGGAATATAGAGCTGGCAGTGAAGAGCATGAAATATGTAATTATGAAAATGATTTGCTCCCATTTTTACAGTTGGATGCTTCTTTAGGAAAATTTTTACAACAACTTTTGAAATGCAACTCTGTACAGAGAAATACAAAAACATTAAAGAGAGACATTTGGGTGAATAAACACACTTCTCTGAAGCATTTACTAAGTAGTATGGTATTAGACAATACATCAACACTTTATGAAGAAAGGAGATTTTGGAGAAGAGAAAAAATTACTGAATATCATCAATGTGAAAGATATTTCTCTAAAAGTTTATTACATCTCCCTCAACCATTAAATCGAGTTTATGACAAGTTCTACCATTTAGATCAACATAAGAAAGTATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060630-3-5,4-5-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.024
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTCCTCACAGAGAAGGAA
R:
TGCTCTTCACTGCCAGCTCTA
Band lengths:
173-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types