MmuALTD1033188-2/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000061780 | Cfd
Description
complement factor D (adipsin) [Source:MGI Symbol;Acc:MGI:87931]
Coordinates
chr10:79890873-79891612:+
Coord C1 exon
chr10:79890873-79890973
Coord A exon
chr10:79890974-79890977
Coord C2 exon
chr10:79891456-79891612
Length
4 bp
Sequences
Splice sites
5' ss Seq
TATGTGGTG
5' ss Score
-15.5
3' ss Seq
AATACACCTACCCTCCTCAGCAG
3' ss Score
3.31
Exon sequences
Seq C1 exon
AGGAGTCCATAAAACAGCCCTGAGAGCCTGCTGGGTCAGTGCCTGCTGTCAGAATGCACAGCTCCGTGTACTTCGTGGCTCTGGTGATCCTGGGAGCGGCT
Seq A exon
GTAT
Seq C2 exon
CAGCACAGCCCCGAGGCCGGATTCTGGGTGGCCAGGAGGCCGCAGCCCATGCTCGGCCCTACATGGCTTCCGTGCAAGTGAACGGCACACACGTGTGCGGTGGCACCCTGCTGGACGAGCAGTGGGTGCTCAGTGCTGCACACTGCATGGATGGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061780-3-2,4-2,5-2,6-2-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(20.1=84.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGGCTCTGGTGATCCTG
R:
ACTTGCACGGAAGCCATGTAG
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types