MmuALTD1033599-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000063488 | Zkscan7
Description
zinc finger with KRAB and SCAN domains 7 [Source:MGI Symbol;Acc:MGI:3040678]
Coordinates
chr9:122886808-122888949:+
Coord C1 exon
chr9:122886808-122887065
Coord A exon
NA
Coord C2 exon
chr9:122888424-122888949
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTCTCTTTGTGTTTCTGTAGGTG
3' ss Score
11.89
Exon sequences
Seq C1 exon
TGATGCTCTCATGCTTCCCGTCCCGCCGTCGTTGCCATTTCCTAGTGTCCTGGAGGTGTGTGGGGCCGTTGAGCCGTCACGCATGACGGTGGCGACGCGGTGGAAAGTGCGGCCCGCACTCGGGCCGCGACGCGGGCGGTGCCGGGGTGCTTACCCGAGGCGGAGCCGCGTCGTCCTCGTGTTGTGGTCGCTCGGCTTGGGGTCGGCTCGAGTTGTTGGCTCCCGTGCGTCAGCGCTGCACGGGGCAGACGCGGCCAG
Seq A exon
NA
Seq C2 exon
GTGACACTTTCCTCACTTCCTTTCTTGACTCTGAAAAAACAGCCCCCGCAGTTTGAAGCAGAGACTCATTTTCAGTGTGCCTGCTGTAGCTGGAACCAGCTTCTCTTTTGGGATCACAATGACCATGGAAGGCAGGGGGACATTAGATATCATCCCCAGGACTGCCATGTATCAGAAGCAGGAGGGGAACTTGACTGTGAAGCAGGAACCAGGAAGCCAGACATGGGGACAGAAGAACTACCTTCCCGTCTGTGAAATATTCCGACTGCACTTCAGGCAGTTGTGCTACCATGAGATGTCTGGGCCTCAGCAAGCCCTGAGCCGGCTCAGGGAGCTCTGCCACTGGTGGCTGATGCCAGAGGTCCACACCAAGGAACAGATCCTGGAACTGCTGGTGCTGGAGCAGTTCCTGAGCATCCTGCCCAGGGAGCTTCAGACCTGGGTACAGCTCCATCACCCTGAGACTGGCGAGGAAGCTGTGGCTATGGTGGAGGATTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063488-1-2,2-2-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.149
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(96.9=68.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGTCCTCGTGTTGTGGTC
R:
CCAGCTACAGCAGGCACAC
Band lengths:
182-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types