MmuALTD1033978-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000066798 | Zbtb6
Description
zinc finger and BTB domain containing 6 [Source:MGI Symbol;Acc:MGI:2442998]
Coordinates
chr2:37425500-37430919:-
Coord C1 exon
chr2:37430809-37430919
Coord A exon
NA
Coord C2 exon
chr2:37425500-37429923
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
3' ss Seq
CTGTGCTCTGTTTTGCATAGATC
3' ss Score
8.92
Exon sequences
Seq C1 exon
CCGCGAAGAATAAAGCTGGTTGACTCCGGAAGCGTTTCCTTCCAGGCTAAGTCCATCTTCCGGCCTGGGCTGCCATTGCCGCGGAAGCCTCAAAGCCAGTTTTGCTAGTCG
Seq A exon
NA
Seq C2 exon
ATCGTGACCATGGCTGCTGAGTCTGATGTTCTACACTTCCAGTTTGAACAGCAAGGAGATGTGGTCCTACAGAAAATGAATCTCTTGAGACAGCAGAATTTATTTTGTGATGTATCCATTTATATTAACGATACTGAGTTCCAGGGGCACAAGGTGATTTTGGCTGCTTGCTCCACTTTCATGAGAGATCAGTTTTTACTCACACAGTCAAAACATGTCAGAATCACCATTCTACAGAGTGCAGAAGTAGGCTGGAAGTTGCTGTTGTCCTGCTATACTGGAGCACTTGAAGTAAAAAGAAAAGAGCTTTTGAAATACTTGACTGCTGCCAGTTACCTTCAGATGGTTCACATTGTAGAAAAATGCACAGAAGCTTTGTCAAAGTATTTGGAAATTGACCTTTCTATGAAAAATAACCAACACACTGACTTGTGTCAGTCTTCAGATACAGATGTTAAGAATGAAGAAGAAAATTCTGATAAAGACTGTGAGATCATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066798-9-4,10-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=24.8),PF134651=zf-H2C2_2=WD(100=6.1),PF0009621=zf-C2H2=WD(100=5.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTTTCCTTCCAGGCTAAGT
R:
AGGACCACATCTCCTTGCTGT
Band lengths:
148-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types