MmuALTD1034551-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000070617 | Gm13089
Description
predicted gene 13089 [Source:MGI Symbol;Acc:MGI:3649972]
Coordinates
chr4:143698015-143699395:-
Coord C1 exon
chr4:143699336-143699395
Coord A exon
chr4:143699085-143699335
Coord C2 exon
chr4:143698015-143698584
Length
251 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
TATACTCATTTCTCCCACAGTAG
3' ss Score
7.43
Exon sequences
Seq C1 exon
AATGACTCTTTCAAAGAAGACACAATGAATGTCAACTCTCCACCCACCCTCATGAAACTG
Seq A exon
GCAAGTCAGAGGCTACTGAGGGAGGAGGCCTTGGCCATTTCTGCTCTCAAGGACCTACCCAATATGCTGTTCCCAGTGATGTTTGAGGAGGCCTTCATTAATGGTCATACTAAGATCTTGAAGGCCATGATACCCTTGTGGCCCTTCCCATACTTTTCTTTAGGAATGATGATAAAGAACCTGACCCTAGATACATTGAAGGCTGTTCTTCAGGAAATAGATATACTTATTTCAAAAGTGGTGCATTCCAG
Seq C2 exon
TAGGTGCAAACTCAAAGAGATCAAATGGAAGAATACAGACTATGGTTTGCAAGGAATATGGCCTGGGTCCCATGAATTTGATGGCTTATCAGAGTTCATGGAACAGAAGCAGCCTGACTGTGGGGTGAAGAAAGAATTGAAGGTGATAACTCATCTCAAACTCATGGAGGGCAGCCTTGATGAATGTGCTACATACTTGTTGCAGTGGGCCCAGCAGAGAAAAGATTCAATTCATCTATGCTGTAGAAAGCTGAAGATTCAGGGCTCAATCAACGCCACAGTTATAGAAATCTTCAAAATTGTACATGCAGACTGTATACAAGAGCTGGAGCTATGTTGTCTTTGCCTGGAAGATTTGGATTTTCTTAACCCTTACCTGAAACAGATAAACAACCTTATTAGACTCAAACTAGATGAAATCAAAGGTACTGTCAGTATGGGTGAATCTAGAAATATTGATGAGGAGAAAGTGATCACATTGATATCTCAACTTCCCACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070617-1-1,2-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACCCACCCTCATGAAACT
R:
GGCGTTGATTGAGCCCTGAAT
Band lengths:
299-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types