MmuALTD1036315-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000086219 | Srrm4os
Description
serine/arginine repetitive matrix 4, opposite strand [Source:MGI Symbol;Acc:MGI:1924048]
Coordinates
chr5:116461724-116465487:+
Coord C1 exon
chr5:116461724-116461803
Coord A exon
chr5:116461804-116461864
Coord C2 exon
chr5:116462395-116465487
Length
61 bp
Sequences
Splice sites
5' ss Seq
TGGGTAGGG
5' ss Score
4.66
3' ss Seq
CATCCCATCTTTCCCTAAAGGTT
3' ss Score
9.58
Exon sequences
Seq C1 exon
GAACACAGCAAAAGAATAGACTCAGTGACCTGATGAAGTTCATCTGGAAGTCTGGATGGGCAGAGCCTGAACTTCTGAGG
Seq A exon
GTAAAGAAAAGAGTTCCTACAACCGAGGCATCTCCAGGCCCTGCAGTTCCTCTGACACTGG
Seq C2 exon
GTTGCTGTCAGGCGCACCAGTGGATCCTGAGGCCAGAGGACACTGCTGGGTTTATTGGGACTGAGTCATTAAGAAAGCTTCCGTGGTAATAAGTCATGTTAGCAGCTACCATGTGTGTGATGTCAGATTCCAAGCCTTGACATGAGTTTTCCTACAACAGATGCCTGGAGCCTGGCAGGACTGCATAGTTGTTGTTGTTGTTTTGTTATTGGTATTTATATATGTGTGTACATATTCTTGGCAAGGATGTGGAGGTCAGAAGTCAACATTAGGTAACTCCCTTTTTTTTTTTTTTTGCATTTTTTAAAATTAGGTATTTTCCTCATTTACATTTTCAATGCTAGGTAACTCCCTTAATAATCACCCTCTACCTTGTTAGTTAATTGTTTAATTTTTTTTTTTGAGATAGGGTCTCCCAATGAATCTGGAGGTCAGCAGGTTAGCAAGACTGTCTGGGAAGAAGCCCTAGTGACCCTACTGTCTCCTCCTCCTCCTCCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000086219-9-4,10-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGCCTGAACTTCTGAGG
R:
CATCACACACATGGTAGCTGCT
Band lengths:
143-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types