MmuALTD1036775-3/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000089711 | Gm16240
Description
predicted gene 16240 [Source:MGI Symbol;Acc:MGI:3801994]
Coordinates
chr10:76293176-76294860:+
Coord C1 exon
chr10:76293176-76293276
Coord A exon
chr10:76293277-76293302
Coord C2 exon
chr10:76294391-76294860
Length
26 bp
Sequences
Splice sites
5' ss Seq
AGGGCAGCT
5' ss Score
-5.83
3' ss Seq
AGCTGAATTTTGTACAATAGGTT
3' ss Score
5.11
Exon sequences
Seq C1 exon
ATGTGGATGGAGGAGACAGGGCAGAGCTATTAGGGCTAACATTCATCTCTAGAAAGAAAACGCTGGAAGGAAGCGATGTGCTCAAGTGACCACCGACTGCA
Seq A exon
GCTGAGTGCATAAGCAGAGAGCCAGG
Seq C2 exon
GTTCCATCTCGACAGGCTGTTCAGTCCTCCCGGCAAGTCGAGCATCACGTGCGCCAATACCCCAAACCCACCAAACCCACCCGCGGTCACCCAGCCTACTCACATGGGTTAGCGCCGTCTGCCACAATCAACATGCGCAGAGAGCTGAGACAGACATCCCTCTGACCTCGCTGTGCCAAGAGCGACCAGTGCATATCTCGGGACTTTACCAGGGCAGCCCGGGCTGCAAAGAGAAGAGAGTACCGATGTCTCAGGGTCACGGGGGCAGGCACACCCACACTTCAAAACACTGCTGCACTCATCCTGTGCAGAGGCACTCGTGCAGAGGGTGAGGGGCCTGCTGCACGGACCACACTCTTGTCTGTTTAACTATCATCCGTTATCTCGTGCGCTTCCTAACCCCTTCCGTCCCTTTTCTCCTCAAAACTTAATTTGAAGATGCAGTTTGGATATAAGATGTTTAGATCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000089711-2-0,3-0,4-0,5-0-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGATGGAGGAGACAGGG
R:
TGAACAGCCTGTCGAGATGGA
Band lengths:
124-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types