MmuALTD1036855-2/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000090173 | Fbxw10
Description
F-box and WD-40 domain protein 10 [Source:MGI Symbol;Acc:MGI:3052463]
Coordinates
chr11:62873371-62875189:+
Coord C1 exon
chr11:62873371-62873470
Coord A exon
chr11:62873471-62873492
Coord C2 exon
chr11:62874942-62875189
Length
22 bp
Sequences
Splice sites
5' ss Seq
GAGGTGACC
5' ss Score
5.57
3' ss Seq
CTCTCTCATTTTGGTTCCAGGAT
3' ss Score
9.46
Exon sequences
Seq C1 exon
GGAGGTGCTGCAGGTGTCTCTCCTCTACCTCCGGGTCATCAGTGCCTGTGGAGACGGCAAGATCCGAATTTATAATTTCCTCAATGGGAACTGTCTGAAG
Seq A exon
GTGATAAAAGTCGACGCCAGAG
Seq C2 exon
GATGGTGGCCCACACGGACAGCAACATTCTCGTGTTCCAGTTTGAAAATGTCAAGTGGCAGTACAGCTCAGACAAGAACAAAGTAAAGAAGAGCAAGGACAAAGAGGAGGAGAGGGAAGAGACCAGCCTCGGGGATGAGCATTCCAGGTCTACCATTCAGGGGCACAGCCTGAAGGACTCTGTGTCTAGTAAACAGGAGTTCTCAAAGTCCCGGGTTCACCTGAAACAAACCAAGAACCTATCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000090173-20-22,21-22,22-22,23-22-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.464
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTACCTCCGGGTCATCAG
R:
AGAATGTTGCTGTCCGTGTGG
Band lengths:
109-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types