MmuALTD1036910-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000090659 | Zfp493
Description
zinc finger protein 493 [Source:MGI Symbol;Acc:MGI:1920208]
Coordinates
chr13:67779719-67783916:+
Coord C1 exon
chr13:67779719-67779819
Coord A exon
NA
Coord C2 exon
chr13:67783790-67783916
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTTCGT
5' ss Score
6.43
3' ss Seq
TTGATTTCATTTAATTTCAGAAA
3' ss Score
7.45
Exon sequences
Seq C1 exon
GAAACCACGTTTCTACTCTCGGTCTGCATAGTTGCATCTTTCCCAAAGTTGAGCAAGAAAAAGGTCTTGCTCAGTACTCGGTTTGCATCTCTCACATGGAG
Seq A exon
NA
Seq C2 exon
AAACTGCTGTCATTCAGAGATGTGGCCATTGATTTCTCTGCAGAGGAGCGTGAATGTCTGGACTCTGCTCAGTGGAATTTGTATAAGGAAGTGATGTTGGAGAATTACAGCCACCTTGTGTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000090659-0-1,1-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCTTGCTCAGTACTCGGT
R:
TCCACTGAGCAGAGTCCAGAC
Band lengths:
116-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types