MmuALTD1037142-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000094559 | Cyp2d34
Description
cytochrome P450, family 2, subfamily d, polypeptide 34 [Source:MGI Symbol;Acc:MGI:2385022]
Coordinates
chr15:82618259-82618662:-
Coord C1 exon
chr15:82618582-82618662
Coord A exon
chr15:82618563-82618581
Coord C2 exon
chr15:82618259-82618419
Length
19 bp
Sequences
Splice sites
5' ss Seq
GGAGTGGGT
5' ss Score
-0.71
3' ss Seq
CACTCCATCTCCACTCCCAGGGC
3' ss Score
7.64
Exon sequences
Seq C1 exon
GTGTGGTCCTTGCATCTTACGGGCCCGAGTGGCGAGAGCAGAGGCAATTCTCTGTATCCACCCTGCGAAACTTCGGCCTGG
Seq A exon
GCAAGAAATCTCTGGAGGA
Seq C2 exon
GGCAGTCCATCAATCCCAACACCATGCTGAACAACGCTGTGTGCAATGTGATTGCATCTCTCATTTTTGCCCGTCGCTTTGAATATGAAGACCCTTTCCTCATCAGGATGCTAAAAATGCGGGAAGAAAGTTTGAAAGAAGTCACTGGCTTCATTCCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000094559-2-5,3-5,4-5-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006717=p450=FE(11.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTCCTTGCATCTTACGGG
R:
GCGTTGTTCAGCATGGTGTTG
Band lengths:
116-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types