MmuALTD1037168-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000095253 | Zfp799
Description
zinc finger protein 799 [Source:MGI Symbol;Acc:MGI:2443934]
Coordinates
chr17:32821778-32822200:-
Coord C1 exon
chr17:32822074-32822200
Coord A exon
chr17:32822068-32822073
Coord C2 exon
chr17:32821778-32821838
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACA
5' ss Score
5.19
3' ss Seq
TCTCTTGATCTGTATTTTAGGAA
3' ss Score
10.59
Exon sequences
Seq C1 exon
GAGTCAGTGACCTTGGAGGATGTGGCTGTGAACTTCACCTTGGAAGAGTGGACTATGCTGAATGCATCCCAAAAGGAGCTCTACAAAGATGTGATGCAGGACACCTTGAGGAACCTGTCCTATATAG
Seq A exon
GTGAAG
Seq C2 exon
GAAACAAATGGGAACACCAAAATATTGAAAATGAGTATGAAACTCTCTGGAGAAAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000095253-3-2,4-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0202611=RyR=PU(72.4=97.7),PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0202611=RyR=PD(17.3=42.9),PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGCAGGACACCTTGAGG
R:
AGTTTTCTCCAGAGAGTTTCATACT
Band lengths:
95-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types