MmuALTD1038782-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000039798 | 2600006K01Rik
Description
RIKEN cDNA 2600006K01 gene [Source:MGI Symbol;Acc:MGI:1917569]
Coordinates
chr2:29868723-29870025:-
Coord C1 exon
chr2:29869925-29870025
Coord A exon
NA
Coord C2 exon
chr2:29868723-29869370
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CTGTCCTCTTCTCCGCCCAGGCC
3' ss Score
9.6
Exon sequences
Seq C1 exon
GAGCCCCAAGGGCTAGGTCAGAAAGGACAGGCCTAACTGAAACCCAGGGGAAACCCGGGAAGCCGGGGACGCCCGAGACATGTAGGGAGCCCAAAGGAGGG
Seq A exon
NA
Seq C2 exon
GCCCTAGAGGTCCAGGGTTAGGCACCTGCTCCAGACGCGTCCTGGGGTCCGCCTTCTCCGTGTGGACCTCGGAAGGCGTTGGCACGGAAGGAAGGATCCGTGGGCCATGGTGGACCGCTTGTACCATGGGCGTTCATCTCACTCCTGGAATACTGACACCCGGGATTCCCGGCTCTCTGCCTCTCAGCCGTGGAGGCTGCAGTCTTCGCGAGGAGCCCAGGTTCCCGCCCCCTGCTCCATCTGAGACGCCCTCTGGCGGCCTGAGGCAGTAACTCCACATACCCAGCAGATGACGCGATGAGTTGGAGAGCAAGCCCAAGCTTGGGGGAGAGGACTGAGTGCAGCTGATCTGGCCACTTCCGCGACCTCGCATCACCTCCGCAGGCTCCGGCCCTTAAAGCAAAGCCCTTCTTTCAATTGCTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTCGAGACAGGGTTTCTTCTCTGTGTAGCCCTGGCTATCCTGGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039798-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGTAGGGAGCCCAAAGGA
R:
CTTGGGCTTGCTCTCCAACTC
Band lengths:
344-709
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types