MmuALTD1038914-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000097322 | A530083I20Rik
Description
RIKEN cDNA A530083I20 gene [Source:MGI Symbol;Acc:MGI:3040711]
Coordinates
chr9:122901915-122903126:-
Coord C1 exon
chr9:122903026-122903126
Coord A exon
NA
Coord C2 exon
chr9:122901915-122902026
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
3' ss Seq
ACAATTTCTATTTCCTCCAGTTA
3' ss Score
7.78
Exon sequences
Seq C1 exon
AGGTTCCTTAGAAGCTCTGAAGCGCTGCAGATGCCCTGGCTTCCAGACATCACTATTATTAACTCGGTGGACAGTCGTGGAGAGTTCAGCCAAGGCCTCAG
Seq A exon
NA
Seq C2 exon
TTAGGACACCACCAACAGACCAAGAATTACAGGAAAATACATGAGAGATTCCTTATAAGAACATGGACGAGTCAGGGGCAGCATCATCACTGGAAACCACACTCTAGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000097322-0-1,1-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGAAGCGCTGCAGATGC
R:
CCATGCTAGAGTGTGGTTTCCA
Band lengths:
199-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types