MmuALTD1038926-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000035875 | AI182371
Description
expressed sequence AI182371 [Source:MGI Symbol;Acc:MGI:2138853]
Coordinates
chr2:35100855-35101428:-
Coord C1 exon
chr2:35101328-35101428
Coord A exon
NA
Coord C2 exon
chr2:35100855-35101008
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
CCTCCTTTAAATTGTTTCAGGTA
3' ss Score
10.27
Exon sequences
Seq C1 exon
GTGTTAAAGGGTGAAACCGGGAATGGAGGAAAAATAAAGGATGGAAAAAGAAGAATCTACAAACTAGCAAAGACCAGCTCTTTCATGGGAGCAACTGGACT
Seq A exon
NA
Seq C2 exon
GTATTTGTCACAAGTGTGCTGAGCAGTGCCAGAGCATCAGAGCCAATGACCTGAAGAGAAAGCCAAAGGCAATGAGACTCCTGCCTTCTAGCACTAAGCCTGTCTTCACAGGGCCAGGCTCCCATGGCTGAGTCCTCATTCTGCGTTAATTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035875-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGGTGAAACCGGGAATGG
R:
AACGCAGAATGAGGACTCAGC
Band lengths:
243-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types