MmuALTD1038947-1/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000018800 | Abca5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:MGI Symbol;Acc:MGI:2386607]
Coordinates
chr11:110329137-110337694:-
Coord C1 exon
chr11:110337594-110337694
Coord A exon
NA
Coord C2 exon
chr11:110329137-110329256
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TTCCTTTGTTTTCCTTTTAGTAA
3' ss Score
9.04
Exon sequences
Seq C1 exon
GCGTAGCGGGGCGGCGGGCACGCGCGCGCTCGGCCTCGCGGACCGCGTCTCCGCGCAGAATTTCCGAGCTCCGTCACTTACCGCGGTCGCGGTCGCCGCAG
Seq A exon
NA
Seq C2 exon
TAAACTGACCTAGAAAACATGGCTACTGCAATTAGGGATGTGGGAGTTTGGAGACAGACCAGAACACTTCTACTGAAAAATTACCTAATTAAATGCAGGACTAAAAAAAGTAGTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018800-0-5,1-5,2-5-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF126982=ABC2_membrane_3=PU(1.0=11.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTCCGCGCAGAATTTCC
R:
TCAGTAGAAGTGTTCTGGTCTGTCT
Band lengths:
132-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types