MmuALTD1039296-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000073418 | C4b
Description
complement component 4B (Chido blood group) [Source:MGI Symbol;Acc:MGI:88228]
Coordinates
chr17:34728765-34729493:-
Coord C1 exon
chr17:34729432-34729493
Coord A exon
chr17:34729400-34729431
Coord C2 exon
chr17:34728765-34728897
Length
32 bp
Sequences
Splice sites
5' ss Seq
ATGGTCAGT
5' ss Score
6.57
3' ss Seq
CCATCTCTTTATTCCCTCAGGAA
3' ss Score
9.21
Exon sequences
Seq C1 exon
TGCCCTCGACTGCTAAGGTCACTGGAGCGAAGGGTGGAGGACAAGGACGGCTACCGGATGAG
Seq A exon
GTTCGCCTGCTATTATCCCCGAGTGGAGTATG
Seq C2 exon
GAAAGGACACCATGGCCTCCATAGGTCAGACCCGCAACTTCCTGAGCCGGGCCTCTTGCCGCCTTCGTTTGGAGCCTAACAAAGAGTACTTGATCATGGGGATGGACGGGGAAACCAGTGACAACAAGGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073418-58-68,59-68,60-68-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF0175916=NTR=PU(9.9=32.4)
A:
NA
C2:
PF0175916=NTR=FE(39.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGGGTGGAGGACAAGGA
R:
TGTTAGGCTCCAAACGAAGGC
Band lengths:
116-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types