MmuALTD1039647-1/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000024292 | Cyp4f14
Description
cytochrome P450, family 4, subfamily f, polypeptide 14 [Source:MGI Symbol;Acc:MGI:1927669]
Coordinates
chr17:32916688-32917432:-
Coord C1 exon
chr17:32917332-32917432
Coord A exon
NA
Coord C2 exon
chr17:32916688-32916889
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
CTGCACATTTATTCACCCAGCAG
3' ss Score
2.22
Exon sequences
Seq C1 exon
GGAGGAGGCATCCAGGCTAGGCAGGGATTGGCTGGCATAGAATGGCCCACCCTCCAAGCATCAAGAAGCAAGGGATAAAAGAGTCCCAGAGGAGAGGGAAG
Seq A exon
NA
Seq C2 exon
CAGGATGTCACAGCTGAGCCTGTCCTGGTTGGGACTGGGGCCCGAGGTGGCCTTCCCATGGAAGACCCTGCTACTGCTTGGGGCCTCCTGGATCCTGGCCCGGATTCTGATCCAGATCTATGCTGCCTATAGGAACTATCGTCACCTCCATGGCTTCCCTCAGCCCCCCAAACGGAACTGGCTTATGGGTCACGTGGGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024292-2-1,3-1,4-1,5-1-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006717=p450=PU(3.0=21.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTCCAAGCATCAAGAAGC
R:
GTAGCAGGGTCTTCCATGGGA
Band lengths:
127-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types