MmuALTD1040205-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000073721 | Gm13125
Description
predicted gene 13125 [Source:MGI Symbol;Acc:MGI:3712553]
Coordinates
chr4:144376692-144377898:-
Coord C1 exon
chr4:144377798-144377898
Coord A exon
chr4:144377641-144377797
Coord C2 exon
chr4:144376692-144377261
Length
157 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGG
5' ss Score
3.33
3' ss Seq
TTTTTCTGTTTTACCCACAGGGA
3' ss Score
12.98
Exon sequences
Seq C1 exon
GGCAGCCCAGAACATTCTGAGGAATGAGGCTTTGGCCATCAGCGCTTTGCAGTACTTACCTGAACTATTCTTACCACAACTGTTGAAGCAAGCCTACGATG
Seq A exon
GTAACCATCTTAAGGTCCTGAGGGCAATAGTATCTTCCTGGCCTTTCCCTCGCCTTCCTCTTGGAGCTCTGAAGAAGAGAACACCCTACTTGGAGACTCAATTACAAGTTGTCTTAGAGGAGGTTGATAAGCTGCTTATCCAGGAGGTTCACCCCAG
Seq C2 exon
GGAGTACAAACTAGAAGTGCTGGATTTACGGTCTGTGGGACAAAACTATTTGAATGTGTGGCCTGGGGCCATGGATGACTGGTTACCCAAGACCACTCAAACAGATCCTTGCTGTTCTAAGACAGTAATGACACAGCCCTTGAAAGTACTAGTGGACTTGCAGCTCAACAATAGAGGCCAGAGTAGGCTGTTCTCCTACCTCGTTCAGTGGAGTGATAGGAGGAAAGGGTTGTTACAGCTGTACTGTAATAAGCTTCAGATCTGGTCACCATCCCAACAAAACTACAGGAAGCTCTCACAAAAGGTGAACCTGGACTATGTGGAAACACTGGGCCTGCATTCCTCCTGCAGTCCATCCTTCTTGCTTAACTTTGCTCCTTACTTGCGCCAAATGAGGAACTTGCGTAAACTTGCTCTCTCCAACATCCGTGAAGAACACATTATCTCTCCGGAGAAGAGGAGGTGTATCATCACCAGGTTCACCTTGCAGATCCTTAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073721-0-0,1-0,2-0-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAGGAATGAGGCTTTGGC
R:
TTGTTGAGCTGCAAGTCCACT
Band lengths:
257-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types