MmuALTD1040483-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:39064675-39065525:-
Coord C1 exon
chr2:39065425-39065525
Coord A exon
chr2:39065381-39065424
Coord C2 exon
chr2:39064675-39064723
Length
44 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
3' ss Seq
TTATCTTTGTTTTTACACAGGGC
3' ss Score
9.74
Exon sequences
Seq C1 exon
TCGGCTCGTCGGCCTGAGGTGGGGGCCAAGCGCCCTCGAGAGTCCGCGGAGGCGTGGCTGCTCCCACACAGCAAGTGCACTACTGGAGTCCCTGGACGCAA
Seq A exon
GTAGGCCTCCCTCTCTCCCATGGCCTCCGGCGCTCTACCGCGAG
Seq C2 exon
GGCAGTGACTTTGACCTCCATACTCTTTTAAATATAGTAGATAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754-0-0,1-0,2-0-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTCGGCCTGAGGTGG
R:
AAGAGTATGGAGGTCAAAGTCACTG
Band lengths:
124-168
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types