MmuALTD1040492-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000030954 | Gp2
Description
glycoprotein 2 (zymogen granule membrane) [Source:MGI Symbol;Acc:MGI:1914383]
Coordinates
chr7:119457161-119459330:-
Coord C1 exon
chr7:119459230-119459330
Coord A exon
NA
Coord C2 exon
chr7:119457161-119457296
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
GAGCCTTTCCTTTTCTATAGATT
3' ss Score
8.82
Exon sequences
Seq C1 exon
AGAGCCACATGGGTGGGGAGTGTCAGTATAAAGGAGTCAGGCCGTAGGTTATGTTCCCACACTGGGCAGGGAGGAAGGATACTTTGGGTTCTTCTCTTATG
Seq A exon
NA
Seq C2 exon
ATTTATGAAGAATCTGCAGGCTGCAGAGTAACCTGCAAGCTTCACTTTATGAAAAGGATGGTGGGTTGTGACCTGCTGTGGCTGGCTGCAGCCTCCTGCGTTCTGACACTGGTATCTCCATCTACAATACATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030954-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGGTGGGGAGTGTCAGTA
R:
AGTGAAGCTTGCAGGTTACTCTG
Band lengths:
140-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types