MmuALTD1040618-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000004980 | Hnrnpa2b1
Description
heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
Coordinates
chr6:51466142-51469089:-
Coord C1 exon
chr6:51468989-51469089
Coord A exon
NA
Coord C2 exon
chr6:51466142-51466222
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGGGCGGGG
5' ss Score
-7.89
3' ss Seq
ATTAGATTACTATGTTCTAGGAA
3' ss Score
5.82
Exon sequences
Seq C1 exon
TTGGGTCTTCAGCGTCCTGCGCACCTCGCTAAAGGCTCTCTGCCTTCCCCTCGACGAAATGGCGCCATTGCTTTCTGAAGCCACCGAGGCGCGGGGTGGGG
Seq A exon
NA
Seq C2 exon
GAAACTTTGGTTTTGGGGATTCTCGTGGTGGCGGTGGCAATTTTGGACCAGGACCAGGAAGCAACTTTAGGGGGGGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004980-3-19,4-19-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGTCTTCAGCGTCCTGC
R:
CCCCCTAAAGTTGCTTCCTGG
Band lengths:
175-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types