MmuALTD1040619-4/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000059005 | Hnrnpa3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:MGI Symbol;Acc:MGI:1917171]
Coordinates
chr2:75662890-75663663:+
Coord C1 exon
chr2:75662890-75662892
Coord A exon
chr2:75662893-75662925
Coord C2 exon
chr2:75663622-75663663
Length
33 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CAGTAGAGGAGGTTATGGAGGTG
3' ss Score
-24.19
Exon sequences
Seq C1 exon
GTG
Seq A exon
GTGATGGTGGATATAATGGATTTGGAGGTGATG
Seq C2 exon
GTGGTGGACCAGGATATGGAAACCAGGGTGGTGGATATGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059005-31-29,32-29,33-29,34-29-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.664 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types