MmuALTD1040920-2/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026792 | Lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:MGI Symbol;Acc:MGI:2684789]
Coordinates
chr2:32925216-32961670:-
Coord C1 exon
chr2:32961570-32961670
Coord A exon
chr2:32961562-32961569
Coord C2 exon
chr2:32925216-32961255
Length
8 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
TGCAATTCCTTGGTTTCTAGAAT
3' ss Score
6.75
Exon sequences
Seq C1 exon
AGCTCTCGCGAGAACCGCTGGCCCCACCCAGTCTCTGGGCGACACCCTGGTCGCCCTGTTTCTTATGGGCAGGCGTCTGCGGCAGAGGACTGCAGAGCTTG
Seq A exon
GTCTGTGG
Seq C2 exon
AATCTCGAGACTTTGTCATCCTGAGTTGCGTGTCTTTCTGAAATTTAAAGTTTCGGTGCTCACTTCTATGTTTGAAGGAGACCGGACACCAGCTCAGCTTTTGGGGGCCAATGGTTTGTATCTGTGGCCAAGTCTTCGGAGTGACTGGCCTACCTTGAGGTCCACCCAAGAATCGGAACATCGGTGGAGGACCTCCCCATCCACAGAGCCAGGTTAGCCGCTGGCCAGCCCTGCCAGGGAAGGATGGGTGTGGTTCTTCCCAGCCAAGCTGGACCATCAGGAAAGTTCAAACCAGAACTGAACGAGCCCTGCTGAGAACGGTGAGGGAGGGGGAATTGGCAGAGATAGTCATTGAAGAAGGTATTTGGAAATGTAGATCTGGAGGATGGGGGCGAGGGAGGCTAGTCATTAGTGAGCCATCTGTAAGGGATTTAAGTCGTGGCCATCAGATAGGGATGGAGGGAGCTGTCTCTCAGGAGTGCTGCAATTGAGTGCGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026792-0-0,1-0,2-0,3-0-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF139201=zf-C3HC4_3=PD(71.7=78.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCGCCCTGTTTCTTATGGG
R:
CAGAAAGACACGCAACTCAGGA
Band lengths:
93-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types