MmuALTD1041978-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000030433 | Sbk2
Description
SH3-binding domain kinase family, member 2 [Source:MGI Symbol;Acc:MGI:2685925]
Coordinates
chr7:4962931-4964401:-
Coord C1 exon
chr7:4964301-4964401
Coord A exon
chr7:4964148-4964300
Coord C2 exon
chr7:4962931-4963185
Length
153 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
3' ss Seq
TCCTTTTGTCTGTCTTGCAGAAA
3' ss Score
11.96
Exon sequences
Seq C1 exon
GATGCTGGCAGGAACCCCCGAAGTGCAAGGCGCTAACTGCAGTAGGCAGAAAGGGATCAGACAAGCCTTGGAGAAGGCGAAGTCTGGAGCTCTGAGCCCAG
Seq A exon
GTCAGAAGTAGGGCAAGGTTAACCGGCCTGAGGGAAGGCTGCAGTTGAACAGGAAAACAGGTGGCAAGAGTCCTGGCCCCTCGACAGGACAAGAGACACCTTGAAGCAATCGAGTGCTTTAGTGTTGGGGACAGAATCCAAGGCCCAAGTTGT
Seq C2 exon
AAATGCCAGGCAAACAGTCAGAAGACAAGCCAATGGAAGTGTCAACTGTGGAGGATGGAGGTGATGAAGGCCTGGGAGGCCTAACGGTAGAGGAGCTGCAGCAGGGGCAGGAGGCTGCTCTGGCCTTGGAGGACATGATGGCTCTGAGTGCCCAGACCCTGGTCCAAACTGAGGTGGAAGAGCTGTACGAGGAAGTGCGTCCCCTGGGCCAGGGCCGGTTCGGCCGTGTCCTGCTGGTTACTCACCGCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030433-0-0,1-0,2-0-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.341
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006920=Pkinase=PU(15.2=27.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGATCAGACAAGCCTTGGA
R:
TCCTCGTACAGCTCTTCCACC
Band lengths:
243-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types