MmuALTD1041979-1/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000021687 | Scamp1
Description
secretory carrier membrane protein 1 [Source:MGI Symbol;Acc:MGI:1349480]
Coordinates
chr13:94252993-94285666:-
Coord C1 exon
chr13:94285566-94285666
Coord A exon
NA
Coord C2 exon
chr13:94252993-94253070
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
3' ss Seq
TCTTTCAATTCTTTTTCCAGGAC
3' ss Score
10.94
Exon sequences
Seq C1 exon
CTACTCGCTCTCCAAGTCTTGTCTCCCCCACCTGCCACGTGGGACCTGCGCGCACCGTCCTCCCCTACACAGGCCACCACCCCTTCCCCAAGCCGCACTAG
Seq A exon
NA
Seq C2 exon
GACCCATCTGTCACACAGGTGACAAGAAATGTGCCACCGGGACTTGATGAATACAACCCTTTCTCCGACTCTCGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021687-0-3,1-3,2-3-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types