MmuALTD1042139-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000048304 | Slitrk3
Description
SLIT and NTRK-like family, member 3 [Source:MGI Symbol;Acc:MGI:2679447]
Coordinates
chr3:73047265-73057648:-
Coord C1 exon
chr3:73057548-73057648
Coord A exon
chr3:73057263-73057547
Coord C2 exon
chr3:73047265-73051455
Length
285 bp
Sequences
Splice sites
5' ss Seq
GTGGTGTGT
5' ss Score
3.6
3' ss Seq
CATCTTTATTTCTATTGCAGTTT
3' ss Score
8.84
Exon sequences
Seq C1 exon
TGGGGGCGGCTGGTGGCTTTGCATTCGGGTTCCAGCCCTGCGTTTTCTGTATTGCCTTCTAGTCCCTGACCTGGCGCTCCCAGTTTAGAGGCAGACGTTCG
Seq A exon
GTAAGTAACGTGTAATCTGATTTTAGTTATTTCCTAGGCCATCAAAGCGGTACTTTTAAAGCAGGTCAGTCTTTAAAAGATGCGGTCGCCGCCACTGTCGCCGCCGCCGGGAGCGTCTCCTTGGCCTGGAACGCTCGCCCCCCTCCTCTGCCCACCGCTCCCTGTCCTCTGGCTGAAGAAGTGAAGGCGCTCCAATGGTGGGCTGTCAGGGGATTCACAACCCGCCAACGGGATCACATCGCCTTCGTGTTCTGCCTGAGATTTCCCAACGCCAAGTGCAATGTG
Seq C2 exon
TTTTGTAATCAACCAGGAATGATGAAGCCAAGCATAGCTGAAATGCTTCACAGAGGAAGAATGCTGTGGATAATTCTTCTAAGCACAATTGCTCTAGGATGGACTACCCCAATTCCCCTGATAGAGGACTCAGAAGAAATAGATGAGCCCTGTTTTGATCCATGCTACTGCGAAGTTAAAGAAAGCCTCTTTCACATACATTGTGACAGCAAGGGATTTACAAACATTAGTCAGATTACTGAGTTCTGGTCAAGACCTTTTAAACTGTATCTTCAGAGGAATTCGATGAGAAGACTATACACAAACAGTTTTCTTCACTTGAATAATGCGGTGTCCATTAACCTTGGGAACAATGCATTGCAGGACATTCAAACTGGAGCATTTAATGGCCTTAAGATTTTAAAGAGACTGTATCTCCATGAGAACAAACTAGATGTCTTCAGAAATGACACCTTCCTTGGCTTAGAAAGTCTGGAATATCTTCAGGCAGATTACAATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048304-0-2,1-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF138551=LRR_8=WD(100=5.8),PF138551=LRR_8=WD(100=6.1),PF0146213=LRRNT=WD(100=2.8),PF138551=LRR_8=WD(100=6.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCCCTGCGTTTTCTGTAT
R:
TGTAAATCCCTTGCTGTCACA
Band lengths:
292-577
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types