MmuALTD1042799-1/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000094870 | Zfp131
Description
zinc finger protein 131 [Source:MGI Symbol;Acc:MGI:1919715]
Coordinates
chr13:119790149-119791311:-
Coord C1 exon
chr13:119791211-119791311
Coord A exon
NA
Coord C2 exon
chr13:119790149-119790287
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
ATCATGCTCCTCTTTTGTAGAGC
3' ss Score
8.34
Exon sequences
Seq C1 exon
AGGTGAAGATGGAGAGCGAGGAGCTGCCTGGGTACCCGAGCAGCTGCGCCACGGGACTAGAGAGCGTGGAAAGAAAGGCACGAGGCCCCGGCGCCAGCTAG
Seq A exon
NA
Seq C2 exon
AGCACCCCGACGGCCATGGAGGCTGAAGAGACGATGGAATGCCTTCAGGAGTTTCCTGAACATCATAAAATGATCTTGGACCGATTGAATGAACAACGGGAGCAGGACCGGTTTACGGACATCACCCTGATTGTCGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000094870-0-0,1-0,2-0-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.045
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=PU(17.0=42.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCGTGGAAAGAAAGGCA
R:
TCCTGAAGGCATTCCATCGTC
Band lengths:
92-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types