MmuALTD1042802-1/5 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000050954 | Zfp169
Description
zinc finger protein 169 [Source:MGI Symbol;Acc:MGI:1915161]
Coordinates
chr13:48506907-48513487:-
Coord C1 exon
chr13:48513387-48513487
Coord A exon
NA
Coord C2 exon
chr13:48506907-48506993
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
CTTTTCTTCTTGTTCCTCAGATT
3' ss Score
11.37
Exon sequences
Seq C1 exon
CGCTGCGTGGGTAGTGAAGTGCGCGCGCGTCACCCCGGTCGGTGTACTTCCGCATCCTGCAGTCGTCACCTGTGCCTGTGGACGATTCTACTGCGGTTCTG
Seq A exon
NA
Seq C2 exon
ATTGGACTCTGAAAGCAGACTCCTCTCCAGGGAGAATATTCTGGAACGTGGGAAATGGCCCCAGGGCTCCTGACAACCAGAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050954-0-0,1-0,2-0,3-0,4-0-1/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGTGGGTAGTGAAGTGC
R:
TCTCTGGTTGTCAGGAGCCC
Band lengths:
182-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types