MmuALTD1042837-2/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000066721 | Zfp575
Description
zinc finger protein 575 [Source:MGI Symbol;Acc:MGI:2141921]
Coordinates
chr7:24587158-24587637:-
Coord C1 exon
chr7:24587537-24587637
Coord A exon
chr7:24587521-24587536
Coord C2 exon
chr7:24587158-24587242
Length
16 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
3' ss Seq
CCTTTCGTCTTTTTCTCCAGGTT
3' ss Score
12.18
Exon sequences
Seq C1 exon
GGGAGGAGGGGATGGAAGTGAAGCTGGGCCCTACGGCTCGGCAATCTCCTTCCCGCTCTTCTCTCCTCCAACGGCGTCCCAGCGCCCGCTGGGAGGTGCAG
Seq A exon
GTCCGAGGGCTACAAG
Seq C2 exon
GTTTCCCTAATTCTCTGAGTCCCCAGTTCTATGCCAGAGATGCGATTTAGCGACACAGCATCAGTAGGCTGAGACTAAAGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066721-1-0,2-0,3-0,4-0-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATCTCCTTCCCGCTCTTC
R:
TCGCTAAATCGCATCTCTGGC
Band lengths:
114-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types