MmuALTD1042838-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000071291 | Zfp58
Description
zinc finger protein 58 [Source:MGI Symbol;Acc:MGI:99205]
Coordinates
chr13:67496185-67500511:-
Coord C1 exon
chr13:67500411-67500511
Coord A exon
NA
Coord C2 exon
chr13:67496185-67496211
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGGT
5' ss Score
6.36
3' ss Seq
CGCTGGCTGGTTCTACTCAGCTG
3' ss Score
3.84
Exon sequences
Seq C1 exon
CCGGAAACAGTATTTAATTGAGTCTGAAAGTGTGCTGTTTCTCCAAAGTTGGGTGAGAGTGCTGTCCTGCTCAGCTCTCGAGTTGCATCGCTGACGTAGAG
Seq A exon
NA
Seq C2 exon
CTGTTCTGGCTCAAATTCCTCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071291-0-7,1-7-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGAAACAGTATTTAATTGAGTCTG
R:
TGGGAGAGGAATTTGAGCCAGA
Band lengths:
127-167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types